Download Tools for High Performance Computing 2015: Proceedings of by Andreas Knüpfer, Tobias Hilbrich, Christoph Niethammer, José PDF
By Andreas Knüpfer, Tobias Hilbrich, Christoph Niethammer, José Gracia, Wolfgang E. Nagel, Michael M. Resch
High functionality Computing (HPC) is still a driving force that gives large potentials and advantages for technological know-how and society. besides the fact that, a profound realizing of the computational issues and really good software program is required to reach at potent and effective simulations. committed software program instruments are vital components of the HPC software program panorama, and help software builders. even supposing a device is by way of definition now not part of an program, yet quite a supplemental piece of software program, it will probably make a primary distinction through the improvement of an software. Such instruments reduction software builders within the context of debugging, functionality research, and code optimization, and hence make an incredible contribution to the improvement of sturdy and effective parallel software program. This ebook introduces a variety of the instruments awarded and mentioned on the ninth foreign Parallel instruments Workshop held in Dresden, Germany, September 2-3, 2015, which provided a longtime discussion board for discussing the newest advances in parallel tools.
Read or Download Tools for High Performance Computing 2015: Proceedings of the 9th International Workshop on Parallel Tools for High Performance Computing, September 2015, Dresden, Germany PDF
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The abstracts and papers during this quantity have been provided on the 5th Annual overseas Computing and Combinatorics convention (COCOON ’99), which used to be held in Tokyo, Japan from July 26 to twenty-eight, 1999. the subjects conceal such a lot points of theoretical computing device technological know-how and combinatorics relating computing.
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Additional info for Tools for High Performance Computing 2015: Proceedings of the 9th International Workshop on Parallel Tools for High Performance Computing, September 2015, Dresden, Germany
Example text
Id=1237547 (2015) 6. Intel: Intel 64 and IA-32 Architectures Software Developer Manuals. html (2015) 7. Intel: Intel Open Source Technology Center for PerfMon. org/perfmon/ (2015) 8. Intel: Intel Xeon Processor E3-1200 v3 Product Family Specification Update. pdf (2015) 9. Intel: Intel Xeon Processor E5 v3 Family Uncore Performance Monitoring. https://www-ssl. com/content/dam/www/public/us/en/zip/xeon-e5-v3-uncore-performance-monitoring. zip (2015) 10. : Perfsuite: An accessible, open source performance analysis environment for linux.
Fulton · R. Henschel Scientific Applications and Performance Tuning Indiana University, E. Tenth Street, Bloomington, IN 2709, USA © Springer International Publishing Switzerland 2016 A. Knüpfer et al. 1007/978-3-319-39589-0_3 29 30 M. Wagner et al. behavior of the applications on the HPC system and, second, they help in identifying critical performance issues. In this paper we present our efforts to analyze and optimize the RNA-Seq assembler Trinity [4]. Trinity is a software tool that was developed for accurate de novo reconstruction of transcriptomes from RNA-Seq data.
We have listed suitable event sets to identify the bandwidth saturation, load imbalance, and false sharing patterns with HPM on the Intel Haswell architecture. , the sharing of cache lines at the L3 level. Moreover, a more fine-grained and correct filtering of instructions would be helpful for pattern-based performance analysis. Using a selection of streaming loop kernels we found the error for the bandwidthrelated events to be small on average (−1 % . . +2 %), with a maximum undercounting of about −6 % for the L3 traffic.